A variable point kernel dosimetry method for virtual reality simulation applications in nuclear safeguards and security

© 2013 IEEE. Personal use of this material is permitted. Permission from IEEE must be obtained for all other uses, in any current or future media, including reprinting/republishing this material for advertising or promotional purposes, creating new collective works, for resale or redistribution to servers or lists, or reuse of any copyrighted component of this work in other works.This paper presents an algorithm to calculate gamma dose rates intended for virtual reality (VR) applications. It dynamically adapts the method to cope with both accuracy and time requirements. Given the real-time constraints imposed by VR applications, more accurate, but computationally intensive stochastic algorithms (e.g., Monte Carlo) are not suited to this task. On the opposite end, a Point Kernel (PK) method can be effective in some cases with as little as one point (mono PK) to define a source, in contrast with the millions of points that Monte Carlo computes. Simple mono PK codes may lack the desired accuracy in some circumstances, requiring a more detailed source representation. In this work, a novel method is presented which automatically estimates the appropriate level of detail for a source's volumetric representation, then generates a non-regular mesh model and subsequently computes the dose rate via a PK method, performing this three-step process in real time.This work was supported by the European Commission's Joint Research Centre Ph.D. grant program.Moltó Caracena, T.; Gonçalves, JGM.; Peerani, P.; Vendrell Vidal, E. (2013). A variable point kernel dosimetry method for virtual reality simulation applications in nuclear safeguards and security. IEEE Transactions on Nuclear Science. 60(5):3862-3871. doi:10.1109/TNS.2013.2279411S3862387160

Revalorization of Posidonia oceanica Waste for the Thermochemical Production of Biochar

Every year, many tonnes of Posidonia oceanica are removed from Mediterranean beaches to maintain the quality and pleasure of use of the beaches. Most of this waste ends up in landfills, entailing removal costs. In this work, the Posidonia oceanica material was characterised, and a washing system was developed to obtain biochar. An adequate washing of the starting biomass was shown to play a key role as it led to an over 90% salt content reduction and, therefore, a decrease in conductivity values. The use of biochar as a soil remediator improves soil properties, carbon sequestration, and plant growth. However, not all types of biochars are suitable for this type of application. Therefore, the properties of biochar made from Posidonia oceanica at different temperatures (300, 400, and 500 °C) were studied. All the biochars obtained showed to exceed 10% organic carbon, which is the lower limit to be applied to soils, the maximum percentage having been obtained at 300 °C. In addition, all presented pH values (8.02, 10.32, and 10.38 for the temperatures of 300, 400, and 500 °C, respectively) that were similar to those of other effective biochars for the remediation of acid soils.The present study was funded by the Ministry of Science and Innovation (Spain) [grant number PID2019-108632RB-I00] and by Prometheus Programme (Spain) [grant number CIPROM/2021/027]

TOSCA-based orchestration of complex clusters at the IaaS level

[EN] This paper describes the adoption and extension of the TOSCA standard by the INDIGO-DataCloud project for the definition and deployment of complex computing clusters together with the required support in both OpenStack and OpenNebula, carried out in close collaboration with industry partners such as IBM. Two examples of these clusters are described in this paper, the definition of an elastic computing cluster to support the Galaxy bioinformatics application where the nodes are dynamically added and removed from the cluster to adapt to the workload, and the definition of an scalable Apache Mesos cluster for the execution of batch jobs and support for long-running services. The coupling of TOSCA with Ansible Roles to perform automated installation has resulted in the definition of high-level, deterministic templates to provision complex computing clusters across different Cloud sites.The authors would like to thank the European Commission for the financial support for project INDIGO-DataCloud (RIA 653549)Caballer Fernández, M.; Donvito, G.; Moltó, G.; Rocha, R.; Velten, M. (2017). TOSCA-based orchestration of complex clusters at the IaaS level. Journal of Physics: Conference Series (Online). 898:1-8. https://doi.org/10.1088/1742-6596/898/8/082036S1889

Multi-elastic Datacenters: Auto-scaled Virtual Clusters on Energy-Aware Physical Infrastructures

[EN] Computer clusters are widely used platforms to execute different computational workloads. Indeed, the advent of virtualization and Cloud computing has paved the way to deploy virtual elastic clusters on top of Cloud infrastructures, which are typically backed by physical computing clusters. In turn, the advances in Green computing have fostered the ability to dynamically power on the nodes of physical clusters as required. Therefore, this paper introduces an open-source framework to deploy elastic virtual clusters running on elastic physical clusters where the computing capabilities of the virtual clusters are dynamically changed to satisfy both the user application's computing requirements and to minimise the amount of energy consumed by the underlying physical cluster that supports an on-premises Cloud. For that, we integrate: i) an elasticity manager both at the infrastructure level (power management) and at the virtual infrastructure level (horizontal elasticity); ii) an automatic Virtual Machine (VM) consolidation agent that reduces the amount of powered on physical nodes using live migration and iii) a vertical elasticity manager to dynamically and transparently change the memory allocated to VMs, thus fostering enhanced consolidation. A case study based on real datasets executed on a production infrastructure is used to validate the proposed solution. The results show that a multi-elastic virtualized datacenter provides users with the ability to deploy customized scalable computing clusters while reducing its energy footprint.The results of this work have been partially supported by ATMOSPHERE (Adaptive, Trustworthy, Manageable, Orchestrated, Secure, Privacy-assuring Hybrid, Ecosystem for Resilient Cloud Computing), funded by the European Commission under the Cooperation Programme, Horizon 2020 grant agreement No 777154.Alfonso Laguna, CD.; Caballer Fernández, M.; Calatrava Arroyo, A.; Moltó, G.; Blanquer Espert, I. (2018). Multi-elastic Datacenters: Auto-scaled Virtual Clusters on Energy-Aware Physical Infrastructures. Journal of Grid Computing. 17(1):191-204. https://doi.org/10.1007/s10723-018-9449-zS191204171Buyya, R.: High Performance Cluster Computing: Architectures and Systems. 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In: 2011 10th International Symposium on Parallel and Distributed Computing (ISPDC), pp 163–169 (2011). https://doi.org/10.1109/ISPDC.2011.32Farahnakian, F., Liljeberg, P., Plosila, J.: Energy-efficient virtual machines consolidation in cloud data centers using reinforcement learning. In: 2014 22nd Euromicro International Conference on Parallel, Distributed and Network-Based Processing (PDP), pp 500–507 (2014). https://doi.org/10.1109/PDP.2014.109Masoumzadeh, S., Hlavacs, H.: Integrating vm selection criteria in distributed dynamic vm consolidation using fuzzy q-learning. In: 2013 9th International Conference on Network and Service Management (CNSM), pp 332–338 (2013). https://doi.org/10.1109/CNSM.2013.6727854Feller, E., Rilling, L., Morin, C.: Energy-aware ant colony based workload placement in clouds. 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Hyperspectral detection of citrus damage with Mahalanobis kernel classifier

Presented is a full computer vision system for the identification of post-harvest damage in citrus packing houses. The method is based on the combined use of hyperspectral images and the Mahalanobis kernel classifier. More accurate and reliable results compared to other methods are obtained in several scenarios and acquired images

Clinical features and health-related quality of life in adult patients with mucopolysaccharidosis IVA: the Spanish experience

Background: Mucopolysaccharidosis (MPS) IVA or Morquio A syndrome is a progressive and disabling disease characterized by a deficiency of the enzyme N-acetylgalactosamine-6-sulphate sulphatase. Its clinical presentation is very heterogeneous and poorly understood in adults. The aim of this study was to describe the clinical manifestations of MPS IVA in adult patients in Spain and to assess their health-related quality of life (HRQoL). Results: Thirty-three patients from nine reference centres participated in the study. The median age was 32 (interquartile range [IQR]: 20.5–40.5) years. The phenotype was classical in 54.5% of patients, intermediate in 33.3% of patients, and non-classical in 12.1% of patients. The most common clinical manifestation was bone dysplasia, with a median height of 118 (IQR: 106–136) cm. Other frequent clinical manifestations were hearing loss (75.7%), ligamentous laxity (72.7%), odontoid dysplasia (69.7%), limb deformities that required orthopaedic aids (mainly hip dysplasia and genu valgus) (63.6%), and corneal clouding (60.6%). In addition, 36.0% of patients had obstructive sleep apnoea/hypopnoea syndrome and 33.3% needed non-invasive ventilation. Cervical surgery and varisation osteotomy were the most common surgical interventions (36.4% each). Almost 80% of patients had mobility problems and 36.4% used a wheelchair at all times. Furthermore, 87.9% needed help with self-care, 33.3% were fully dependent, and 78.8% had some degree of pain. HRQoL according to the health assessment questionnaire was 1.43 (IQR: 1.03–2.00) in patients with the non-classical phenotype, but 2.5 (IQR: 1.68–3.00) in those with the classical phenotype. Seven patients were initiated on enzyme replacement therapy (ERT), but two of them were lost to follow-up. Lung function improved in four patients and slightly worsened in one patient. The distance achieved in the six-minute walk test increased in the four patients who could perform it. HRQoL was better in patients treated with elosulfase alfa, with a median (IQR) of 1.75 (1.25–2.34) versus 2.25 (1.62–3.00) in patients not treated with ERT. Conclusions: The study provides real-world data on patients with MPS IVA. Limited mobility, difficulties with self-care, dependence, and pain were common, together with poor HRQoL. The severity and heterogeneity of clinical manifestations require the combined efforts of multidisciplinary teams

Intra-articular injection of two different doses of autologous bone marrow mesenchymal stem cells versus hyaluronic acid in the treatment of knee osteoarthritis: long-term follow up of a multicenter randomized controlled clinical trial (phase I/II)

Background: Mesenchymal stromal cells (MSCs) are a promising option to treat knee osteoarthritis (OA). Their safety and usefulness have been reported in several short-term clinical trials but less information is available on the longterm efects of MSC in patients with osteoarthritis. We have evaluated patients included in our previous randomized clinical trial (CMM-ART, NCT02123368) to determine their long-term clinical efect. Materials: A phase I/II multicenter randomized clinical trial with active control was conducted between 2012 and 2014. Thirty patients diagnosed with knee OA were randomly assigned to Control group, intraarticularly administered hyaluronic acid alone, or to two treatment groups, hyaluronic acid together with 10×106 or 100×106 cultured autol‑ ogous bone marrow-derived MSCs (BM-MSCs), and followed up for 12 months. After a follow up of 4 years adverse efects and clinical evolution, assessed using VAS and WOMAC scorings are reported. Results: No adverse efects were reported after BM-MSCs administration or during the follow-up. BM-MSCs-adminis‑ tered patients improved according to VAS, median value (IQR) for Control, Low-dose and High-dose groups changed from 5 (3, 7), 7 (5, 8) and 6 (4, 8) to 7 (6, 7), 2 (2, 5) and 3 (3, 4), respectively at the end of follow up (Low-dose vs Control group, p=0.01; High-dose vs Control group, p=0.004). Patients receiving BM-MSCs also improved clinically accord‑ ing to WOMAC. Control group showed an increase median value of 4 points (−11;10) while Low-dose and Highdose groups exhibited values of −18 (−28;−9) and −10 (−21;−3) points, respectively (Low-dose vs Control group p=0.043). No clinical diferences between the BM-MSCs receiving groups were found. Conclusions: Single intraarticular injection of in vitro expanded autologous BM-MSCs is a safe and feasible proce‑ dure that results in long-term clinical and functional improvement of knee OA

Therapeutic vaccine in chronically Hiv-1-infected patients

Therapeutic vaccinations aim to re-educate human immunodeficiency virus (HIV)-1specific immune responses to achieve durable control of HIV-1 replication in virally suppressed infected individuals after antiretroviral therapy (ART) is interrupted. In a double blinded, placebocontrolled phase IIa multicenter study, we investigated the safety and immunogenicity of intranodal administration of the HIVACAT T cell Immunogen (HTI)-TriMix vaccine. It consists of naked mRNA based on cytotoxic T lymphocyte (CTL) targets of subdominant and conserved HIV-1 regions (HTI), in combination with mRNAs encoding constitutively active TLR4, the ligand for CD40 and CD70 as adjuvants (TriMix). We recruited HIV-1-infected individuals under stable ART. Study-arms HTI-TriMix, TriMix or Water for Injection were assigned in an 8:3:3 ratio. Participants received three vaccinations at weeks 0, 2, and 4 in an inguinal lymph node. Two weeks after the last vaccination, immunogenicity was evaluated using ELISpot assay. ART was interrupted at week 6 to study the effect of the vaccine on viral rebound. The vaccine was considered safe and well tolerated. Eighteen percent (n = 37) of the AEs were considered definitely related to the study product (grade 1 or 2). Three SAEs occurred: two were unrelated to the study product, and one was possibly related to ART interruption (ATI). ELISpot assays to detect T cell responses using peptides covering the HTI sequence showed no significant differences in immunogenicity between groups. There were no significant differences in viral load rebound dynamics after ATI between groups. The vaccine was safe and well tolerated. We were not able to demonstrate immunogenic effects of the vaccine

HIVconsv Vaccines and Romidepsin in Early-Treated HIV-1-Infected Individuals: Safety, Immunogenicity and Effect on the Viral Reservoir (Study BCN02)

Kick&kill strategies combining drugs aiming to reactivate the viral reservoir with therapeutic vaccines to induce effective cytotoxic immune responses hold potential to achieve a functional cure for HIV-1 infection. Here, we report on an open-label, single-arm, phase I clinical trial, enrolling 15 early-treated HIV-1-infected individuals, testing the combination of the histone deacetylase inhibitor romidepsin as a latency-reversing agent and the MVA.HIVconsv vaccine. Romidepsin treatment resulted in increased histone acetylation, cell-associated HIV-1 RNA, and T-cell activation, which were associated with a marginally significant reduction of the viral reservoir. Vaccinations boosted robust and broad HIVconsv-specific T cells, which were strongly refocused toward conserved regions of the HIV-1 proteome. During a monitored ART interruption phase using plasma viral load over 2,000 copies/ml as a criterium for ART resumption, 23% of individuals showed sustained suppression of viremia up to 32 weeks without evidence for reseeding the viral reservoir. Results from this pilot study show that the combined kick&kill intervention was safe and suggest a role for this strategy in achieving an immune-driven durable viremic control